A0A0D3ELC4 protein (Oryza barthii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0D3ELC4

Uncharacterized protein. (993 aa)

Predicted Functional Partners:

A0A0D3EKL5

0.574

A0A0D3FLL7

0.574

A0A0D3H2N7

0.547

A0A0D3HML5

0.547

A0A0D3HUS9

0.527

A0A0D3FL72

0.518

A0A0D3HW47

0.500

A0A0D3H180

0.473

A0A0D3FLM6

0.468

A0A0D3ET56

0.466

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3EKL5	A0A0D3ELC4	SANT domain-containing protein.	Uncharacterized protein.	0.574
A0A0D3EKL5	A0A0D3ET56	SANT domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.929
A0A0D3EKL5	A0A0D3FLM6	SANT domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.929
A0A0D3EKL5	A0A0D3H2N7	SANT domain-containing protein.	Uncharacterized protein.	0.956
A0A0D3EKL5	A0A0D3HML5	SANT domain-containing protein.	RB_A domain-containing protein.	0.956
A0A0D3ELC4	A0A0D3EKL5	Uncharacterized protein.	SANT domain-containing protein.	0.574
A0A0D3ELC4	A0A0D3ET56	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.466
A0A0D3ELC4	A0A0D3FL72	Uncharacterized protein.	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	0.518
A0A0D3ELC4	A0A0D3FLL7	Uncharacterized protein.	DIRP domain-containing protein.	0.574
A0A0D3ELC4	A0A0D3FLM6	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.468
A0A0D3ELC4	A0A0D3H180	Uncharacterized protein.	Uncharacterized protein.	0.473
A0A0D3ELC4	A0A0D3H2N7	Uncharacterized protein.	Uncharacterized protein.	0.547
A0A0D3ELC4	A0A0D3HML5	Uncharacterized protein.	RB_A domain-containing protein.	0.547
A0A0D3ELC4	A0A0D3HUS9	Uncharacterized protein.	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	0.527
A0A0D3ELC4	A0A0D3HW47	Uncharacterized protein.	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	0.500
A0A0D3ET56	A0A0D3EKL5	WD_REPEATS_REGION domain-containing protein.	SANT domain-containing protein.	0.929
A0A0D3ET56	A0A0D3ELC4	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.466
A0A0D3ET56	A0A0D3FLL7	WD_REPEATS_REGION domain-containing protein.	DIRP domain-containing protein.	0.929
A0A0D3ET56	A0A0D3H2N7	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.872
A0A0D3ET56	A0A0D3HML5	WD_REPEATS_REGION domain-containing protein.	RB_A domain-containing protein.	0.872