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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3EVC2LRRNT_2 domain-containing protein. (212 aa)    
Predicted Functional Partners:
A0A0D3GZZ0
PHB domain-containing protein.
   
 0.842
A0A0D3F2P9
Protein kinase domain-containing protein.
  
 
  0.583
A0A0D3H1B2
Uncharacterized protein.
    
 0.565
A0A0D3H7R0
Uncharacterized protein.
    
 0.565
A0A0D3F0G3
LRRNT_2 domain-containing protein.
  
 
  0.521
A0A0D3GMP7
Uncharacterized protein.
    
 0.499
A0A0D3F8T9
Uncharacterized protein.
  
     0.496
A0A0D3FWW6
Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.
    
 0.492
A0A0D3FTH8
Uncharacterized protein.
  
 
  0.491
A0A0D3G790
Uncharacterized protein.
    
 0.490
Your Current Organism:
Oryza barthii
NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.