STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3EY35Uncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family. (195 aa)    
Predicted Functional Partners:
A0A0D3EN93
Ubiquitin-like domain-containing protein.
    
 0.991
A0A0D3FHA2
UBA_e1_C domain-containing protein; Belongs to the ubiquitin-activating E1 family.
   
 0.962
A0A0D3GVA9
UBA_e1_C domain-containing protein; Belongs to the ubiquitin-activating E1 family.
   
 0.962
A0A0D3HH76
UBA_e1_C domain-containing protein; Belongs to the ubiquitin-activating E1 family.
   
 0.962
A0A0D3HQF6
UBA_e1_C domain-containing protein; Belongs to the ubiquitin-activating E1 family.
   
 0.962
A0A0D3EZG7
HECT domain-containing protein.
   
 0.961
A0A0D3G2P3
HECT domain-containing protein.
   
 0.961
A0A0D3G8P7
HECT domain-containing protein.
   
 0.961
A0A0D3H889
HECT domain-containing protein.
    
 0.950
A0A0D3FGF9
Ubiquitin-like domain-containing protein.
   
 0.924
Your Current Organism:
Oryza barthii
NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.
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