STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3F2Z9Uncharacterized protein. (968 aa)    
Predicted Functional Partners:
A0A0D3FK58
Pyruvate, phosphate dikinase; Belongs to the PEP-utilizing enzyme family.
     
 0.953
A0A0D3G7H5
Pyruvate, phosphate dikinase; Belongs to the PEP-utilizing enzyme family.
     
 0.953
A0A0D3H391
Malate dehydrogenase.
     
 0.953
A0A0D3EUA0
Aspartate aminotransferase.
   
 
 0.944
A0A0D3FGD3
Uncharacterized protein.
     
 0.943
A0A0D3HC22
Uncharacterized protein.
     
 0.943
A0A0D3FX98
Malate synthase; Belongs to the malate synthase family.
     
 0.922
A0A0D3F2T7
Citrate synthase.
     
 0.913
A0A0D3F1X7
Citrate synthase; Belongs to the citrate synthase family.
     
 0.905
A0A0D3GGT5
Formate dehydrogenase, mitochondrial; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Involved in the cell stress response; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily.
    
 0.905
Your Current Organism:
Oryza barthii
NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.