STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3F328RING-type domain-containing protein. (208 aa)    
Predicted Functional Partners:
A0A0D3EN93
Ubiquitin-like domain-containing protein.
    
 0.486
A0A0D3EY35
Uncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.473
A0A0D3ES23
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.460
A0A0D3G1E2
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.456
A0A0D3HRA1
RING-type domain-containing protein.
  
     0.423
A0A0D3ELH1
Ubiquitin-like domain-containing protein; Belongs to the PI3/PI4-kinase family.
    
 0.417
A0A0D3F3V1
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.417
A0A0D3GG85
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.417
A0A0D3EVJ9
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.415
A0A0D3EVK0
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.415
Your Current Organism:
Oryza barthii
NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.
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