STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3F8D6Aconitase_C domain-containing protein. (259 aa)    
Predicted Functional Partners:
A0A0D3FLZ3
3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.
 
 0.994
A0A0D3F030
Aconitase domain-containing protein.
  
 0.981
A0A0D3HI22
Pyruvate carboxyltransferase domain-containing protein.
 
 
 0.980
A0A0D3HR84
Pyruvate carboxyltransferase domain-containing protein.
 
 
 0.980
A0A0D3H370
Uncharacterized protein.
 
 
 0.962
A0A0D3EMB7
Isocitrate dehydrogenase [NAD] subunit, mitochondrial.
  
 0.931
A0A0D3F747
Iso_dh domain-containing protein.
  
 0.931
A0A0D3FX30
Iso_dh domain-containing protein.
  
 0.931
A0A0D3EM66
Pyruvate carboxyltransferase domain-containing protein.
  
 
 0.918
A0A0D3HHX1
Pyruvate carboxyltransferase domain-containing protein.
  
 
 0.918
Your Current Organism:
Oryza barthii
NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.
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