STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3FAI5Uncharacterized protein. (365 aa)    
Predicted Functional Partners:
A0A0D3EME2
Uncharacterized protein.
    
   0.538
A0A0D3FQJ2
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
    
 
 0.452
A0A0D3HFA5
Uncharacterized protein; Belongs to the bacterial ribosomal protein bS18 family.
    
   0.436
A0A0D3HEH5
Uncharacterized protein.
  
 
   0.431
A0A0D3ENH8
Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.
    
   0.430
A0A0D3FXK7
Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.
    
   0.430
A0A0D3FDM3
Uncharacterized protein.
  
 
   0.428
A0A0D3F0G4
Uncharacterized protein.
  
 
   0.417
A0A0D3G410
Uncharacterized protein.
   
   0.416
A0A0D3FTC5
Ribosomal_L2_C domain-containing protein; Belongs to the universal ribosomal protein uS19 family.
   
   0.405
Your Current Organism:
Oryza barthii
NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.
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