STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3FS23Uncharacterized protein. (295 aa)    
Predicted Functional Partners:
A0A0D3F7J2
Nuclear cap-binding protein subunit 2.
    
 0.968
A0A0D3HQ88
RRM domain-containing protein.
    
 0.962
A0A0D3FIE9
MIF4G domain-containing protein.
   
 0.954
A0A0D3HEQ7
Uncharacterized protein.
    
 
 0.947
A0A0D3H095
Uncharacterized protein.
   
 
 0.932
A0A0D3FUG4
Uncharacterized protein.
   
 
 0.920
A0A0D3FWW6
Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.
   
 0.915
A0A0D3FJA2
RRM domain-containing protein.
   
 0.910
A0A0D3GTR3
RRM domain-containing protein.
   
 0.910
A0A0D3H1J6
RRM domain-containing protein.
   
 0.910
Your Current Organism:
Oryza barthii
NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.
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