STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3GB43Malate dehydrogenase. (340 aa)    
Predicted Functional Partners:
A0A0D3F2T7
Citrate synthase.
  
 0.989
A0A0D3F1X7
Citrate synthase; Belongs to the citrate synthase family.
  
 0.986
A0A0D3FI87
Uncharacterized protein.
  
 0.980
A0A0D3HMQ0
Citrate synthase; Belongs to the citrate synthase family.
  
 0.980
A0A0D3FX98
Malate synthase; Belongs to the malate synthase family.
   
 0.971
A0A0D3GR85
Uncharacterized protein.
  
 0.967
A0A0D3H391
Malate dehydrogenase.
   
0.967
A0A0D3HFD5
Malic enzyme.
  
 0.967
A0A0D3F0C3
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
  
 0.958
A0A0D3EUA0
Aspartate aminotransferase.
   
 0.948
Your Current Organism:
Oryza barthii
NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.