A0A0D3GB48 protein (Oryza barthii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0D3GB48

Tr-type G domain-containing protein. (982 aa)

Predicted Functional Partners:

A0A0D3HVU3

0.958

A0A0D3FTC5

0.957

A0A0D3GZG4

0.952

A0A0D3FG90

0.945

A0A0D3GNF9

0.937

A0A0D3ER92

0.932

A0A0D3F7S6

0.932

A0A0D3FFK0

0.929

A0A0D3GYS7

0.929

A0A0D3EZH5

0.926

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3ER92	A0A0D3EZH5	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.993
A0A0D3ER92	A0A0D3F7S6	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Ribosomal_L16 domain-containing protein.	0.998
A0A0D3ER92	A0A0D3FFK0	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.	0.993
A0A0D3ER92	A0A0D3FG90	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	RF_PROK_I domain-containing protein.	0.951
A0A0D3ER92	A0A0D3FTC5	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Ribosomal_L2_C domain-containing protein; Belongs to the universal ribosomal protein uS19 family.	0.998
A0A0D3ER92	A0A0D3GB48	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Tr-type G domain-containing protein.	0.932
A0A0D3ER92	A0A0D3GNF9	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein.	0.983
A0A0D3ER92	A0A0D3GYS7	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Ribosomal_L18e/L15P domain-containing protein.	0.995
A0A0D3ER92	A0A0D3GZG4	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein.	0.994
A0A0D3ER92	A0A0D3HVU3	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Ribosomal_L2_C domain-containing protein.	0.992
A0A0D3EZH5	A0A0D3ER92	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.993
A0A0D3EZH5	A0A0D3F7S6	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Ribosomal_L16 domain-containing protein.	0.993
A0A0D3EZH5	A0A0D3FFK0	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.	0.987
A0A0D3EZH5	A0A0D3FG90	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	RF_PROK_I domain-containing protein.	0.951
A0A0D3EZH5	A0A0D3FTC5	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Ribosomal_L2_C domain-containing protein; Belongs to the universal ribosomal protein uS19 family.	0.996
A0A0D3EZH5	A0A0D3GB48	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Tr-type G domain-containing protein.	0.926
A0A0D3EZH5	A0A0D3GNF9	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.999
A0A0D3EZH5	A0A0D3GYS7	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Ribosomal_L18e/L15P domain-containing protein.	0.982
A0A0D3EZH5	A0A0D3GZG4	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.996
A0A0D3EZH5	A0A0D3HVU3	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Ribosomal_L2_C domain-containing protein.	0.963