STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3GE73Uncharacterized protein. (794 aa)    
Predicted Functional Partners:
A0A0D3FK77
Uncharacterized protein.
     
 0.876
A0A0D3FDF2
Uncharacterized protein.
  
 
 0.874
A0A0D3HBX2
Uncharacterized protein.
  
 
 0.751
A0A0D3FC87
AMP-binding domain-containing protein.
    
 0.740
A0A0D3F5U5
Acetyl-coenzyme A synthetase.
  
 
 0.689
A0A0D3FQE2
AMP-binding domain-containing protein.
  
 
 0.689
A0A0D3FVG2
Acetyl-coenzyme A synthetase.
  
 
 0.689
A0A0D3G8B8
Mediator of RNA polymerase II transcription subunit 13; Component of the Mediator complex, a coactivator involved in regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
  
 
 0.689
A0A0D3H691
Uncharacterized protein.
  
 
 0.689
A0A0D3H692
Uncharacterized protein.
  
 
 0.689
Your Current Organism:
Oryza barthii
NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.
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