STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3GGF0Uncharacterized protein. (313 aa)    
Predicted Functional Partners:
A0A0D3FRI4
RNase_PH domain-containing protein.
   
 0.613
A0A0D3HBM3
Ipi1_N domain-containing protein.
   
 
  0.564
A0A0D3HVU3
Ribosomal_L2_C domain-containing protein.
   
 
  0.563
A0A0D3FR99
Uncharacterized protein.
   
 0.556
A0A0D3GVS7
Uncharacterized protein.
   
 0.556
A0A0D3H462
Uncharacterized protein.
   
 0.556
A0A0D3FTC5
Ribosomal_L2_C domain-containing protein; Belongs to the universal ribosomal protein uS19 family.
   
 
  0.543
A0A0D3HIP3
Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.
     
 0.543
A0A0D3FQ57
Ribos_L4_asso_C domain-containing protein.
    
 0.539
A0A0D3GN00
Ribos_L4_asso_C domain-containing protein.
    
 0.539
Your Current Organism:
Oryza barthii
NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.
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