STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3GJ11Lipase_GDSL domain-containing protein. (359 aa)    
Predicted Functional Partners:
A0A0D3FTC5
Ribosomal_L2_C domain-containing protein; Belongs to the universal ribosomal protein uS19 family.
   
 
 0.517
A0A0D3FDM4
Uncharacterized protein.
   
   0.514
A0A0D3HEH0
Uncharacterized protein.
   
   0.514
A0A0D3GJW3
Uncharacterized protein.
    
 0.507
A0A0D3GYE6
Uncharacterized protein.
    
 0.507
A0A0D3FP88
Uncharacterized protein.
   
   0.496
A0A0D3FP91
Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.
   
   0.496
A0A0D3GKS8
Uncharacterized protein.
  
 
   0.491
A0A0D3HVU3
Ribosomal_L2_C domain-containing protein.
   
 
 0.489
A0A0D3GCW1
Uncharacterized protein.
    
 0.486
Your Current Organism:
Oryza barthii
NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.
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