A0A0D3GM55 protein (Oryza barthii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0D3GM55

Uncharacterized protein. (449 aa)

Predicted Functional Partners:

A0A0D3FB03

0.833

A0A0D3H179

0.833

A0A0D3H181

0.833

A0A0D3GRG6

0.765

A0A0D3GBZ4

0.754

COQ3

0.585

A0A0D3ENR9

0.574

A0A0D3FII8

0.574

A0A0D3FIJ1

0.574

A0A0D3FL00

0.574

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0D3ENR9	A0A0D3GBZ4	A0A0D3ENR9	A0A0D3GBZ4	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.	Uncharacterized protein.	0.975
A0A0D3ENR9	A0A0D3GM55	A0A0D3ENR9	A0A0D3GM55	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.	Uncharacterized protein.	0.574
A0A0D3FB03	A0A0D3GBZ4	A0A0D3FB03	A0A0D3GBZ4	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	Uncharacterized protein.	0.607
A0A0D3FB03	A0A0D3GM55	A0A0D3FB03	A0A0D3GM55	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	Uncharacterized protein.	0.833
A0A0D3FB03	A0A0D3GRG6	A0A0D3FB03	A0A0D3GRG6	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	Thioredoxin domain-containing protein.	0.999
A0A0D3FB03	A0A0D3H179	A0A0D3FB03	A0A0D3H179	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	Uncharacterized protein.	0.999
A0A0D3FB03	A0A0D3H181	A0A0D3FB03	A0A0D3H181	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	Uncharacterized protein.	0.999
A0A0D3FB03	COQ3	A0A0D3FB03	A0A0D3GCX8	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	0.431
A0A0D3FII8	A0A0D3FL00	A0A0D3FII8	A0A0D3FL00	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.872
A0A0D3FII8	A0A0D3GBZ4	A0A0D3FII8	A0A0D3GBZ4	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Uncharacterized protein.	0.975
A0A0D3FII8	A0A0D3GM55	A0A0D3FII8	A0A0D3GM55	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Uncharacterized protein.	0.574
A0A0D3FIJ1	A0A0D3FL00	A0A0D3FIJ1	A0A0D3FL00	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.861
A0A0D3FIJ1	A0A0D3GBZ4	A0A0D3FIJ1	A0A0D3GBZ4	Uncharacterized protein.	Uncharacterized protein.	0.975
A0A0D3FIJ1	A0A0D3GM55	A0A0D3FIJ1	A0A0D3GM55	Uncharacterized protein.	Uncharacterized protein.	0.574
A0A0D3FL00	A0A0D3FII8	A0A0D3FL00	A0A0D3FII8	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.872
A0A0D3FL00	A0A0D3FIJ1	A0A0D3FL00	A0A0D3FIJ1	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Uncharacterized protein.	0.861
A0A0D3FL00	A0A0D3GBZ4	A0A0D3FL00	A0A0D3GBZ4	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Uncharacterized protein.	0.975
A0A0D3FL00	A0A0D3GM55	A0A0D3FL00	A0A0D3GM55	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Uncharacterized protein.	0.574
A0A0D3GBZ4	A0A0D3ENR9	A0A0D3GBZ4	A0A0D3ENR9	Uncharacterized protein.	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.	0.975
A0A0D3GBZ4	A0A0D3FB03	A0A0D3GBZ4	A0A0D3FB03	Uncharacterized protein.	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	0.607