STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3GRD1TFIIB-type domain-containing protein. (239 aa)    
Predicted Functional Partners:
A0A0D3G5K0
Uncharacterized protein.
   
 0.953
A0A0D3H3K2
RPOLD domain-containing protein.
    
 0.951
A0A0D3EZT9
RPOL4c domain-containing protein.
    
 0.950
A0A0D3FXT2
VWFA domain-containing protein.
    
 0.946
A0A0D3GJ86
Uncharacterized protein.
    
 0.945
A0A0D3GMT2
RNA_pol_L_2 domain-containing protein.
    
 0.944
A0A0D3G350
Helicase ATP-binding domain-containing protein.
    
 0.943
A0A0D3ESH9
TAFII28 domain-containing protein.
   
 0.942
A0A0D3GZ69
BSD domain-containing protein.
    
 0.936
A0A0D3H761
Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.
    
 0.936
Your Current Organism:
Oryza barthii
NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.
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