STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3GRT5Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family. (284 aa)    
Predicted Functional Partners:
A0A0D3F995
Uncharacterized protein.
  
 
  0.519
A0A0D3FQF8
Uncharacterized protein.
  
     0.500
A0A0D3H9A8
Uncharacterized protein.
  
     0.495
A0A0D3F3V9
Uncharacterized protein.
  
     0.485
A0A0D3HKU5
Uncharacterized protein.
  
     0.484
A0A0D3GC94
GRAS domain-containing protein; Belongs to the GRAS family.
  
     0.483
A0A0D3GDT1
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
  
     0.478
A0A0D3F3S0
BURP domain-containing protein.
  
 
   0.477
A0A0D3F9X5
AvrRpt-cleavage domain-containing protein.
  
     0.476
A0A0D3ELI5
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
  
     0.464
Your Current Organism:
Oryza barthii
NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.
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