STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3GSR8t-SNARE coiled-coil homology domain-containing protein. (152 aa)    
Predicted Functional Partners:
A0A0D3F051
Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.
     
 0.893
A0A0D3EKA7
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
     
 0.884
A0A0D3EWP2
Uncharacterized protein; Belongs to the synaptobrevin family.
     
 0.881
A0A0D3EZ15
Uncharacterized protein.
     
 0.881
A0A0D3H0P8
Uncharacterized protein.
     
 0.876
A0A0D3H6W1
Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.
     
 0.876
A0A0D3FES7
t-SNARE coiled-coil homology domain-containing protein.
  
  
 
0.872
A0A0D3EME2
Uncharacterized protein.
    
   0.538
A0A0D3FQJ2
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
    
 
 0.452
A0A0D3HFA5
Uncharacterized protein; Belongs to the bacterial ribosomal protein bS18 family.
    
   0.436
Your Current Organism:
Oryza barthii
NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.