STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3GT30Uncharacterized protein. (149 aa)    
Predicted Functional Partners:
A0A0D3F316
Uncharacterized protein.
   
 
 0.948
A0A0D3EY62
Uncharacterized protein.
    
 
 0.917
A0A0D3HN60
Uncharacterized protein.
    
 
 0.878
A0A0D3HUK3
Uncharacterized protein.
    
 
 0.878
A0A0D3G2X6
RTR1-type domain-containing protein.
    
 
 0.864
A0A0D3FQI9
PAPA-1 domain-containing protein.
    
 
 0.806
A0A0D3G2U6
TPR_REGION domain-containing protein.
    
 
 0.806
A0A0D3FJL1
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.804
A0A0D3FXD7
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.779
A0A0D3GY69
Uncharacterized protein.
    
   0.777
Your Current Organism:
Oryza barthii
NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.
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