STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3GUL0RING-type domain-containing protein. (284 aa)    
Predicted Functional Partners:
A0A0D3G2P3
HECT domain-containing protein.
     
 0.732
A0A0D3G8P7
HECT domain-containing protein.
     
 0.732
A0A0D3EZG7
HECT domain-containing protein.
     
 0.709
A0A0D3HA85
Cleavage and polyadenylation specificity factor subunit 2.
   
 
  0.695
A0A0D3F4Z0
UBA domain-containing protein.
  
 
  0.666
A0A0D3EN93
Ubiquitin-like domain-containing protein.
    
  0.665
A0A0D3HEI6
Cellulose synthase; Belongs to the glycosyltransferase 2 family. Plant cellulose synthase subfamily.
  
 
 
 0.612
A0A0D3EU04
Uncharacterized protein.
  
 
  0.607
A0A0D3FPI8
Uncharacterized protein.
  
 
  0.599
A0A0D3EYP9
WD_REPEATS_REGION domain-containing protein.
    
  0.571
Your Current Organism:
Oryza barthii
NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.
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