STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3GXY1LRRNT_2 domain-containing protein. (490 aa)    
Predicted Functional Partners:
A0A0D3F2P9
Protein kinase domain-containing protein.
  
 
  0.584
A0A0D3H5B8
NB-ARC domain-containing protein; Belongs to the disease resistance NB-LRR family.
  
     0.503
A0A0D3GMP7
Uncharacterized protein.
    
 0.499
A0A0D3FTH8
Uncharacterized protein.
  
 
  0.495
A0A0D3FWW6
Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.
    
 0.492
A0A0D3G790
Uncharacterized protein.
    
 0.490
A0A0D3FFC6
Uncharacterized protein.
  
     0.489
A0A0D3F0Q9
Uncharacterized protein; Belongs to the disease resistance NB-LRR family.
  
     0.486
A0A0D3F134
Uncharacterized protein.
  
     0.480
A0A0D3GSL7
Uncharacterized protein.
    
 0.473
Your Current Organism:
Oryza barthii
NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.
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