STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3H9E1PLCXc domain-containing protein. (326 aa)    
Predicted Functional Partners:
A0A0D3F1X6
Uncharacterized protein.
      
 0.475
A0A0D3F0D0
Uncharacterized protein.
   
 
  0.471
A0A0D3FLD9
Uncharacterized protein.
   
 
  0.471
A0A0D3GRJ5
Uncharacterized protein.
   
 
  0.471
A0A0D3GRK0
Uncharacterized protein.
   
 
  0.471
A0A0D3GRM0
Uncharacterized protein.
   
 
  0.471
A0A0D3GRM6
Uncharacterized protein.
   
 
  0.471
A0A0D3GRN1
Uncharacterized protein.
   
 
  0.471
A0A0D3H6V0
Uncharacterized protein.
   
 
  0.471
A0A0D3FQ33
AAI domain-containing protein.
  
  
 0.452
Your Current Organism:
Oryza barthii
NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.
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