STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3HBV7NTP_transf_2 domain-containing protein. (662 aa)    
Predicted Functional Partners:
A0A0D3H7A8
SAM domain-containing protein.
   
 0.627
A0A0D3GKZ8
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
  0.604
A0A0D3FAL5
DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.
    
 
 0.586
A0A0D3GVQ4
RRM domain-containing protein.
    
 
 0.560
A0A0D3ERP0
Uncharacterized protein; Belongs to the DEAD box helicase family.
    
 0.535
A0A0D3FKH7
Uncharacterized protein; Belongs to the DEAD box helicase family.
    
 0.535
A0A0D3HD64
Uncharacterized protein.
    
 0.535
A0A0D3EW30
RNB domain-containing protein.
    
 
 0.528
A0A0D3EZ61
Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.
    
 0.520
A0A0D3HEI4
Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.
    
 0.520
Your Current Organism:
Oryza barthii
NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.