STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3HDB8F-box domain-containing protein. (913 aa)    
Predicted Functional Partners:
A0A0D3EIP9
RING-type domain-containing protein.
    
 0.671
A0A0D3HE36
Uncharacterized protein.
      
 0.568
A0A0D3HEC0
Gln-synt_C domain-containing protein; Belongs to the glutamine synthetase family.
      
 0.568
A0A0D3HQB4
Skp1_POZ domain-containing protein; Belongs to the SKP1 family.
    
 0.546
A0A0D3H5B3
Uncharacterized protein.
  
     0.516
A0A0D3HHB7
Uncharacterized protein.
  
     0.516
A0A0D3HQJ8
Uncharacterized protein.
  
     0.516
A0A0D3FIG4
Nuclear pore protein.
  
     0.506
A0A0D3FSS9
Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.
  
    0.499
A0A0D3F5F5
Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.
  
    0.496
Your Current Organism:
Oryza barthii
NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.