STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3HE04Uncharacterized protein. (270 aa)    
Predicted Functional Partners:
A0A0D3HC96
Chromo domain-containing protein.
    
 
 0.606
A0A0D3F0N9
PHD-type domain-containing protein.
   
 
 0.548
A0A0D3GEI1
Uncharacterized protein.
   
 
 0.548
A0A0D3FSK0
Uncharacterized protein.
    
 
 0.427
A0A0D3FRR3
Uncharacterized protein.
   
 
 0.413
A0A0D3FRR5
MRG domain-containing protein.
   
 
 0.413
A0A0D3HMV1
MRG domain-containing protein.
   
 
 0.413
A0A0D3EIS3
HDAC_interact domain-containing protein.
    
 
 0.407
A0A0D3EIS4
Uncharacterized protein.
    
 
 0.407
A0A0D3F803
Uncharacterized protein.
    
 
 0.407
Your Current Organism:
Oryza barthii
NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.