STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3HMQ0Citrate synthase; Belongs to the citrate synthase family. (1495 aa)    
Predicted Functional Partners:
A0A0D3FDJ3
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
 0.994
A0A0D3GX43
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
 0.992
A0A0D3FX98
Malate synthase; Belongs to the malate synthase family.
  
 0.985
A0A0D3F0C3
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
  
 0.984
A0A0D3HQ35
Uncharacterized protein.
  
 0.984
A0A0D3HVS8
Uncharacterized protein.
  
 0.984
A0A0D3F5U5
Acetyl-coenzyme A synthetase.
  
 0.983
A0A0D3FVG2
Acetyl-coenzyme A synthetase.
  
 0.983
A0A0D3EMX2
Ligase_CoA domain-containing protein.
  
 0.982
A0A0D3GB43
Malate dehydrogenase.
  
 0.980
Your Current Organism:
Oryza barthii
NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.
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