STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3HNJ7Uncharacterized protein. (338 aa)    
Predicted Functional Partners:
A0A0D3FI38
Lactamase_B domain-containing protein.
   
 0.924
A0A0D3G5L4
Lactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione.
  
 
 0.918
A0A0D3H8Y2
Lactamase_B domain-containing protein.
   
 0.907
A0A0D3GX51
Uncharacterized protein.
  
 
 0.906
A0A0D3F3N1
Uncharacterized protein.
  
 
 0.905
A0A0D3G4S2
Lactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione.
  
 
 0.905
A0A0D3GW51
Tryptophan synthase.
  
 
  0.885
A0A0D3GIY2
PALP domain-containing protein.
    
  0.884
A0A0D3FQ61
Uncharacterized protein; Belongs to the TrpA family.
  
 
  0.883
A0A0D3G1I3
Uncharacterized protein.
  
  
 
0.878
Your Current Organism:
Oryza barthii
NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.
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