STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3HRB9RING-type domain-containing protein. (320 aa)    
Predicted Functional Partners:
A0A0D3EN93
Ubiquitin-like domain-containing protein.
    
 0.486
A0A0D3EY35
Uncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.473
A0A0D3EWP0
RING-type domain-containing protein.
  
     0.472
A0A0D3FCG8
RING-type domain-containing protein.
  
     0.467
A0A0D3HTZ2
RING-type domain-containing protein.
  
     0.466
A0A0D3EN08
RING-type domain-containing protein.
  
     0.462
A0A0D3EL21
RING-type domain-containing protein.
  
     0.460
A0A0D3F6G8
RING-type domain-containing protein.
  
     0.446
A0A0D3G8Z2
RING-type domain-containing protein.
  
     0.427
A0A0D3FGF9
Ubiquitin-like domain-containing protein.
    
 0.415
Your Current Organism:
Oryza barthii
NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.
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