STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3HV98Uncharacterized protein. (234 aa)    
Predicted Functional Partners:
A0A0D3HP06
Uncharacterized protein.
   
 0.998
A0A0D3FN59
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
   
 0.996
A0A0D3HF59
Uncharacterized protein.
   
 0.996
A0A0D3FHA5
RPOLD domain-containing protein.
   
 0.994
A0A0D3H0G2
Uncharacterized protein.
   
 0.994
A0A0D3GK57
Uncharacterized protein.
   
 0.992
A0A0D3HJN6
RNA_pol_L_2 domain-containing protein.
   
 0.990
A0A0D3HSA1
RNA_pol_L_2 domain-containing protein.
   
 0.990
A0A0D3GIM6
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.987
A0A0D3HVE2
Uncharacterized protein.
   
 0.987
Your Current Organism:
Oryza barthii
NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.
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