STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3HVR6Pectinesterase. (392 aa)    
Predicted Functional Partners:
A0A0D3GI52
Pectate lyase.
  
 
 0.836
A0A0D3FS84
Pectate lyase.
  
 
 0.830
A0A0D3EPY1
Uncharacterized protein.
   
 
 0.791
A0A0D3F2F5
Pectate lyase.
   
 
 0.791
A0A0D3HEC7
Pectate lyase.
   
 
 0.791
A0A0D3EVZ7
Pectate lyase.
  
 
 0.772
A0A0D3G5K5
Pectate lyase.
  
 
 0.728
A0A0D3F753
Uncharacterized protein.
    
 0.681
A0A0D3GCR1
Pectate lyase.
  
 
 0.646
A0A0D3GCS0
Pectate lyase.
  
 
 0.638
Your Current Organism:
Oryza barthii
NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.