STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3HWP7Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). (899 aa)    
Predicted Functional Partners:
A0A0D3GJW1
Uncharacterized protein.
    
 0.970
A0A0D3FX91
HORMA domain-containing protein.
   
 0.850
A0A0D3EPF9
Uncharacterized protein.
    
 0.838
A0A0D3H761
Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.
    
 0.838
A0A0D3HBM3
Ipi1_N domain-containing protein.
   
 0.830
A0A0D3FFY3
TPR_REGION domain-containing protein.
   
 0.829
A0A0D3H6S3
Uncharacterized protein.
    
 0.826
A0A0D3GIC4
Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.
  
 
 0.823
A0A0D3GJ86
Uncharacterized protein.
    
 0.822
A0A0D3FBC5
Uncharacterized protein.
    
 0.819
Your Current Organism:
Oryza barthii
NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.
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