STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP75954.1AraC-type DNA-binding protein. (139 aa)    
Predicted Functional Partners:
SEP75915.1
Uncharacterized conserved protein PhnB, glyoxalase superfamily.
 
    0.952
SER16189.1
Uncharacterized conserved protein PhnB, glyoxalase superfamily.
 
    0.813
SEQ21023.1
Uncharacterized conserved protein PhnB, glyoxalase superfamily.
 
     0.794
SER09981.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.716
SEQ93821.1
AraC-type DNA-binding protein.
  
     0.688
SES06396.1
AraC-type DNA-binding protein.
  
     0.684
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.668
SES44521.1
Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain.
  
   0.637
SEQ82345.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.625
SER25374.1
AraC-type DNA-binding protein.
  
     0.606
Your Current Organism:
Lentzea albida
NCBI taxonomy Id: 65499
Other names: Asiosporangium albidum, DSM 44437, IFO 16102, JCM 10670, L. albida, Lentzea albida Labeda et al. 2001, NBRC 16102, NRRL B-24073, Saccharothrix aerocolonigenes subsp. staurosporea, Streptomyces stauroporeus, Streptomyces staurosporeus
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