STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP77539.1RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. (392 aa)    
Predicted Functional Partners:
SEP77512.1
Uncharacterized conserved protein.
 
     0.948
SEQ90223.1
Uncharacterized conserved protein.
     0.795
SEQ23456.1
Uncharacterized conserved protein.
 
     0.779
SES39377.1
Uncharacterized conserved protein.
 
     0.779
SER46075.1
Uncharacterized conserved protein.
 
     0.778
SEP77572.1
TIGR03083 family protein.
       0.773
SER74563.1
Uncharacterized conserved protein.
     0.772
SER76574.1
Uncharacterized conserved protein.
 
     0.771
SES35268.1
Uncharacterized conserved protein.
     0.771
dnaX
DNA polymerase III, tau subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
       0.438
Your Current Organism:
Lentzea albida
NCBI taxonomy Id: 65499
Other names: Asiosporangium albidum, DSM 44437, IFO 16102, JCM 10670, L. albida, Lentzea albida Labeda et al. 2001, NBRC 16102, NRRL B-24073, Saccharothrix aerocolonigenes subsp. staurosporea, Streptomyces stauroporeus, Streptomyces staurosporeus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.