STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP78596.1Peroxiredoxin, Ohr subfamily. (140 aa)    
Predicted Functional Partners:
SEP78634.1
Starvation-inducible DNA-binding protein; Belongs to the Dps family.
  
  
 0.867
SES00190.1
DNA-binding transcriptional regulator, MarR family.
  
 0.858
SES28531.1
DNA-binding transcriptional regulator, MarR family.
  
 0.694
SEP78555.1
FMN reductase.
  
    0.570
SES30199.1
Anti-anti-sigma factor.
  
    0.509
SES43343.1
Anti-anti-sigma factor.
  
    0.509
SEQ83468.1
Hypothetical protein.
  
  
 0.486
SER91152.1
Excreted virulence factor EspC, type VII ESX diderm.
  
  
 0.486
SEP83794.1
Trehalose 6-phosphate synthase.
   
    0.465
SES44814.1
Aldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family.
 
      0.456
Your Current Organism:
Lentzea albida
NCBI taxonomy Id: 65499
Other names: Asiosporangium albidum, DSM 44437, IFO 16102, JCM 10670, L. albida, Lentzea albida Labeda et al. 2001, NBRC 16102, NRRL B-24073, Saccharothrix aerocolonigenes subsp. staurosporea, Streptomyces stauroporeus, Streptomyces staurosporeus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.