STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP87309.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (226 aa)    
Predicted Functional Partners:
SEQ95918.1
Signal transduction histidine kinase.
  
 0.990
SEP87281.1
Two-component system, OmpR family, sensor histidine kinase MtrB.
 0.986
SES32374.1
Signal transduction histidine kinase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
 
 0.981
SEQ47874.1
DNA-binding transcriptional regulator, LacI/PurR family.
 
 0.979
SER26540.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.942
SEQ37952.1
Two-component system, OmpR family, sensor histidine kinase MtrB.
  0.941
SER25092.1
PAS domain S-box-containing protein.
 
0.928
SEQ91081.1
Signal transduction histidine kinase.
 0.925
SES30209.1
GAF domain-containing protein.
  
 0.917
SER40505.1
Two-component system, OmpR family, sensor histidine kinase SenX3.
  0.900
Your Current Organism:
Lentzea albida
NCBI taxonomy Id: 65499
Other names: Asiosporangium albidum, DSM 44437, IFO 16102, JCM 10670, L. albida, Lentzea albida Labeda et al. 2001, NBRC 16102, NRRL B-24073, Saccharothrix aerocolonigenes subsp. staurosporea, Streptomyces stauroporeus, Streptomyces staurosporeus
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