STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP98637.1Glycosyl Hydrolase Family 88. (328 aa)    
Predicted Functional Partners:
SEQ31383.1
NPCBM-associated, NEW3 domain of alpha-galactosidase.
 
  
 0.735
SER45497.1
Ricin-type beta-trefoil lectin domain-containing protein.
  
  
  0.730
SER92472.1
CHAT domain-containing protein.
  
     0.680
SER27060.1
Protein of unknown function; Belongs to the glycosyl hydrolase 43 family.
 
     0.678
SEQ18164.1
alpha-L-fucosidase 2.
  
     0.677
SEQ96142.1
Unsaturated chondroitin disaccharide hydrolase.
  
     0.664
SES36577.1
alpha-L-fucosidase 2.
 
     0.655
SES44934.1
Chondroitinase B.
 
  
 0.649
SES38704.1
Hypothetical protein.
  
     0.616
SEP98670.1
Pterin-4-alpha-carbinolamine dehydratase.
       0.610
Your Current Organism:
Lentzea albida
NCBI taxonomy Id: 65499
Other names: Asiosporangium albidum, DSM 44437, IFO 16102, JCM 10670, L. albida, Lentzea albida Labeda et al. 2001, NBRC 16102, NRRL B-24073, Saccharothrix aerocolonigenes subsp. staurosporea, Streptomyces stauroporeus, Streptomyces staurosporeus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.