STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ51859.1Putative spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (343 aa)    
Predicted Functional Partners:
SEQ51888.1
Putative spermidine/putrescine transport system permease protein.
 
 
 0.994
SER16823.1
Spermidine/putrescine transport system permease protein.
 0.986
SES44660.1
Molybdate transport system permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
 0.986
SEQ51943.1
Putative spermidine/putrescine transport system substrate-binding protein.
 
 
 0.984
SEQ51918.1
Putative spermidine/putrescine transport system permease protein.
 
 
 0.983
SER16802.1
Putrescine transport system permease protein.
 
 0.973
SER16902.1
Spermidine/putrescine transport system substrate-binding protein.
 
 0.963
SEP98731.1
Thiamine transport system permease protein.
 
 
 0.881
SEQ51831.1
Low temperature requirement protein LtrA.
       0.773
SEP98703.1
Thiamine transport system substrate-binding protein.
    
 0.753
Your Current Organism:
Lentzea albida
NCBI taxonomy Id: 65499
Other names: Asiosporangium albidum, DSM 44437, IFO 16102, JCM 10670, L. albida, Lentzea albida Labeda et al. 2001, NBRC 16102, NRRL B-24073, Saccharothrix aerocolonigenes subsp. staurosporea, Streptomyces stauroporeus, Streptomyces staurosporeus
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