STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ52846.1RHS repeat-associated core domain-containing protein. (947 aa)    
Predicted Functional Partners:
SEQ52813.1
Hypothetical protein.
       0.718
SES13357.1
Acetyltransferase (GNAT) domain-containing protein.
  
     0.615
SER99696.1
Signal transduction histidine kinase.
  
     0.589
SEQ36715.1
Hypothetical protein.
  
    0.576
SER15927.1
Patatin-like phospholipase.
  
     0.574
SEP91570.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
 
     0.508
SEQ75201.1
Metallophosphoesterase, PPA1498 family.
  
     0.494
SEP87178.1
Endonuclease, Uma2 family (restriction endonuclease fold).
  
     0.485
SEQ28090.1
Butirosin biosynthesis protein H, N-terminal.
  
     0.470
SEQ52786.1
Hypothetical protein.
  
    0.409
Your Current Organism:
Lentzea albida
NCBI taxonomy Id: 65499
Other names: Asiosporangium albidum, DSM 44437, IFO 16102, JCM 10670, L. albida, Lentzea albida Labeda et al. 2001, NBRC 16102, NRRL B-24073, Saccharothrix aerocolonigenes subsp. staurosporea, Streptomyces stauroporeus, Streptomyces staurosporeus
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