STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ46433.1Cysteine desulfurase / selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. (425 aa)    
Predicted Functional Partners:
SEQ46403.1
Nitrogen fixation protein NifU.
 
 0.997
SEQ46465.1
Fe-S cluster assembly ATP-binding protein.
  
 0.993
SEQ46558.1
Fe-S cluster assembly protein SufB.
 
 0.991
SEQ46524.1
Fe-S cluster assembly protein SufD.
 
 
 0.966
SEQ46370.1
Metal-sulfur cluster biosynthetic enzyme.
 
  
 0.942
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.722
SES42672.1
Thioredoxin reductase (NADPH).
  
 
  0.722
SEQ20243.1
Sphingomyelin phosphodiesterase.
    
   0.699
SES16317.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
    
   0.699
SES43903.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
    
   0.699
Your Current Organism:
Lentzea albida
NCBI taxonomy Id: 65499
Other names: Asiosporangium albidum, DSM 44437, IFO 16102, JCM 10670, L. albida, Lentzea albida Labeda et al. 2001, NBRC 16102, NRRL B-24073, Saccharothrix aerocolonigenes subsp. staurosporea, Streptomyces stauroporeus, Streptomyces staurosporeus
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.