STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ61490.1Hypothetical protein. (707 aa)    
Predicted Functional Partners:
SEQ61458.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
    0.658
SES17912.1
Glutamate mutase subunit E.
  
     0.546
SEP83234.1
Zinc/manganese transport system permease protein.
  
  
 0.537
SEQ51023.1
Hypothetical protein.
 
     0.537
SER64310.1
Hypothetical protein.
  
  
 0.537
SES14281.1
Sugar lactone lactonase YvrE.
  
     0.518
SES21065.1
Hypothetical protein.
  
     0.518
SER07762.1
Asparagine synthase (glutamine-hydrolysing).
  
     0.483
SES40969.1
Oxidase EvaA.
  
     0.462
SEQ61380.1
Cytosine deaminase.
       0.432
Your Current Organism:
Lentzea albida
NCBI taxonomy Id: 65499
Other names: Asiosporangium albidum, DSM 44437, IFO 16102, JCM 10670, L. albida, Lentzea albida Labeda et al. 2001, NBRC 16102, NRRL B-24073, Saccharothrix aerocolonigenes subsp. staurosporea, Streptomyces stauroporeus, Streptomyces staurosporeus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.