SEQ61584.1 protein (Lentzea albida) - STRING interaction network

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second shell of interactors

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a 3D structure is known or predicted

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Edges represent protein-protein associations

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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Score

SEQ61584.1

Alkyldihydroxyacetonephosphate synthase. (510 aa)

Predicted Functional Partners:

SEP90271.1

0.829

SER59102.1

0.768

SES40839.1

0.741

SER09981.1

0.735

SEQ82345.1

0.677

SES34686.1

0.640

SES34673.1

0.639

SEQ61617.1

0.554

SEQ25354.1

0.542

SEQ33011.1

0.527

Your Current Organism:

Lentzea albida

NCBI taxonomy Id: 65499
Other names: Asiosporangium albidum, DSM 44437, IFO 16102, JCM 10670, L. albida, Lentzea albida Labeda et al. 2001, NBRC 16102, NRRL B-24073, Saccharothrix aerocolonigenes subsp. staurosporea, Streptomyces stauroporeus, Streptomyces staurosporeus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEP90271.1	SEQ25354.1	SAMN04488000_101608	SAMN04488000_102317	Alkyldihydroxyacetonephosphate synthase.	Acetyl/propionyl-CoA carboxylase, alpha subunit.	0.542
SEP90271.1	SEQ33011.1	SAMN04488000_101608	SAMN04488000_102537	Alkyldihydroxyacetonephosphate synthase.	Diacylglycerol kinase (ATP).	0.774
SEP90271.1	SEQ61584.1	SAMN04488000_101608	SAMN04488000_103534	Alkyldihydroxyacetonephosphate synthase.	Alkyldihydroxyacetonephosphate synthase.	0.829
SEP90271.1	SEQ82345.1	SAMN04488000_101608	SAMN04488000_104476	Alkyldihydroxyacetonephosphate synthase.	2-oxoglutarate ferredoxin oxidoreductase subunit alpha.	0.677
SEP90271.1	SER09981.1	SAMN04488000_101608	SAMN04488000_10691	Alkyldihydroxyacetonephosphate synthase.	Glutamate synthase (NADPH/NADH) large chain.	0.735
SEP90271.1	SER59102.1	SAMN04488000_101608	SAMN04488000_110138	Alkyldihydroxyacetonephosphate synthase.	NADH-quinone oxidoreductase subunit F.	0.768
SEP90271.1	SES34673.1	SAMN04488000_101608	SAMN04488000_12335	Alkyldihydroxyacetonephosphate synthase.	Electron transfer flavoprotein beta subunit.	0.639
SEP90271.1	SES34686.1	SAMN04488000_101608	SAMN04488000_12336	Alkyldihydroxyacetonephosphate synthase.	Electron transfer flavoprotein alpha subunit apoprotein.	0.640
SEP90271.1	SES40839.1	SAMN04488000_101608	SAMN04488000_12739	Alkyldihydroxyacetonephosphate synthase.	Right handed beta helix region.	0.741
SEQ25354.1	SEP90271.1	SAMN04488000_102317	SAMN04488000_101608	Acetyl/propionyl-CoA carboxylase, alpha subunit.	Alkyldihydroxyacetonephosphate synthase.	0.542
SEQ25354.1	SEQ61584.1	SAMN04488000_102317	SAMN04488000_103534	Acetyl/propionyl-CoA carboxylase, alpha subunit.	Alkyldihydroxyacetonephosphate synthase.	0.542
SEQ25354.1	SEQ82345.1	SAMN04488000_102317	SAMN04488000_104476	Acetyl/propionyl-CoA carboxylase, alpha subunit.	2-oxoglutarate ferredoxin oxidoreductase subunit alpha.	0.987
SEQ25354.1	SER09981.1	SAMN04488000_102317	SAMN04488000_10691	Acetyl/propionyl-CoA carboxylase, alpha subunit.	Glutamate synthase (NADPH/NADH) large chain.	0.969
SEQ25354.1	SER59102.1	SAMN04488000_102317	SAMN04488000_110138	Acetyl/propionyl-CoA carboxylase, alpha subunit.	NADH-quinone oxidoreductase subunit F.	0.973
SEQ25354.1	SES34673.1	SAMN04488000_102317	SAMN04488000_12335	Acetyl/propionyl-CoA carboxylase, alpha subunit.	Electron transfer flavoprotein beta subunit.	0.451
SEQ25354.1	SES34686.1	SAMN04488000_102317	SAMN04488000_12336	Acetyl/propionyl-CoA carboxylase, alpha subunit.	Electron transfer flavoprotein alpha subunit apoprotein.	0.842
SEQ33011.1	SEP90271.1	SAMN04488000_102537	SAMN04488000_101608	Diacylglycerol kinase (ATP).	Alkyldihydroxyacetonephosphate synthase.	0.774
SEQ33011.1	SEQ61584.1	SAMN04488000_102537	SAMN04488000_103534	Diacylglycerol kinase (ATP).	Alkyldihydroxyacetonephosphate synthase.	0.527
SEQ61584.1	SEP90271.1	SAMN04488000_103534	SAMN04488000_101608	Alkyldihydroxyacetonephosphate synthase.	Alkyldihydroxyacetonephosphate synthase.	0.829
SEQ61584.1	SEQ25354.1	SAMN04488000_103534	SAMN04488000_102317	Alkyldihydroxyacetonephosphate synthase.	Acetyl/propionyl-CoA carboxylase, alpha subunit.	0.542

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Network Stats

number of nodes:

11

number of edges:

48

average node degree:

8.73

avg. local clustering coefficient:

0.958

expected number of edges:

28

PPI enrichment p-value:

0.000288

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

11 of 362

1.8

4.85

1.50e-16

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003735

Structural constituent of ribosome

11 of 174

2.12

7.38

1.90e-20

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005761

Mitochondrial ribosome

9 of 82

2.36

7.78

3.79e-18

GO:0044391

Ribosomal subunit

10 of 151

2.14

6.98

1.54e-18

GO:0005840

Ribosome

11 of 204

2.05

6.89

4.88e-20

GO:0005762

Mitochondrial large ribosomal subunit

7 of 53

2.44

6.41

4.89e-14

GO:0098798

Mitochondrial protein-containing complex

9 of 274

1.83

4.52

5.76e-14

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:4633

Organellar large ribosomal subunit, and Ribosomal protein L23

9 of 25

2.87

10.51

3.01e-21

CL:4635

Organellar large ribosomal subunit, and Ribosomal protein L23

8 of 20

2.92

9.73

1.95e-19

CL:4506

Mitochondrial translation elongation

10 of 95

2.34

8.41

3.61e-20

CL:4660

Mixed, incl. Ribosomal protein S12/S23, and Ribosomal protein L14p/L23e

5 of 7

3.17

6.19

4.34e-12

CL:4637

Ribosomal protein L23, and Organellar large ribosomal subunit

3 of 8

2.89

2.8

7.53e-06

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

lco03010

Ribosome

10 of 121

2.24

7.88

4.80e-20

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-5389840

Mitochondrial translation elongation

9 of 93

2.3

7.21

4.37e-17

MAP-5419276

Mitochondrial translation termination

9 of 94

2.3

7.19

4.37e-17

MAP-5368287

Mitochondrial translation

9 of 100

2.27

7.1

4.37e-17

MAP-72766

Translation

10 of 337

1.79

4.59

2.54e-15

MAP-392499

Metabolism of proteins

10 of 2732

0.88

0.92

1.95e-06

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005840

Ribosome

11 of 154

2.17

7.89

2.99e-21

GOCC:0005761

Mitochondrial ribosome

9 of 78

2.38

7.89

3.03e-18

GOCC:0044391

Ribosomal subunit

10 of 118

2.25

7.76

1.76e-19

GOCC:0005762

Mitochondrial large ribosomal subunit

7 of 47

2.49

6.7

1.81e-14

GOCC:0098798

Mitochondrial protein complex

9 of 228

1.91

4.96

1.63e-14

(more ...)

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0689

Ribosomal protein

11 of 159

2.16

7.93

9.70e-22

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