STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ70911.1Protein N-acetyltransferase, RimJ/RimL family. (173 aa)    
Predicted Functional Partners:
SEQ70884.1
Kynurenine formamidase.
       0.701
SEQ25354.1
Acetyl/propionyl-CoA carboxylase, alpha subunit.
    
  0.698
SER09981.1
Glutamate synthase (NADPH/NADH) large chain.
   
 
 0.692
SEQ60039.1
Agmatinase; Belongs to the arginase family.
     
 0.670
SEQ82345.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.635
SEQ99626.1
L-ornithine N5-oxygenase.
  
 
 0.555
SES06233.1
L-ornithine N5-oxygenase.
  
 
 0.555
SEQ72867.1
Protein N-acetyltransferase, RimJ/RimL family.
  
     0.544
SEQ70867.1
Hypothetical protein.
   
   0.493
rnc
Ribonuclease-3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.474
Your Current Organism:
Lentzea albida
NCBI taxonomy Id: 65499
Other names: Asiosporangium albidum, DSM 44437, IFO 16102, JCM 10670, L. albida, Lentzea albida Labeda et al. 2001, NBRC 16102, NRRL B-24073, Saccharothrix aerocolonigenes subsp. staurosporea, Streptomyces stauroporeus, Streptomyces staurosporeus
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.