STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER01683.1FAD/FMN-containing dehydrogenase. (543 aa)    
Predicted Functional Partners:
SER59102.1
NADH-quinone oxidoreductase subunit F.
   
   0.768
SER92775.1
FAD binding domain-containing protein.
  
     0.768
SES40839.1
Right handed beta helix region.
    
  0.741
SER09981.1
Glutamate synthase (NADPH/NADH) large chain.
    
 0.735
SER01613.1
Two component transcriptional regulator, LuxR family.
       0.693
SER01645.1
Signal transduction histidine kinase.
       0.693
SEQ82345.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.677
SES34686.1
Electron transfer flavoprotein alpha subunit apoprotein.
  
 
 0.640
SES34673.1
Electron transfer flavoprotein beta subunit.
  
 
 0.639
SER01729.1
Hypothetical protein.
       0.545
Your Current Organism:
Lentzea albida
NCBI taxonomy Id: 65499
Other names: Asiosporangium albidum, DSM 44437, IFO 16102, JCM 10670, L. albida, Lentzea albida Labeda et al. 2001, NBRC 16102, NRRL B-24073, Saccharothrix aerocolonigenes subsp. staurosporea, Streptomyces stauroporeus, Streptomyces staurosporeus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.