STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER09279.1Protein of unknown function. (63 aa)    
Predicted Functional Partners:
SER09399.1
Helix-turn-helix domain-containing protein.
 
   
 0.808
SES20701.1
Protein of unknown function.
  
     0.770
SEQ19491.1
Protein of unknown function.
  
     0.699
SES42368.1
Predicted methyltransferase.
  
     0.536
SEQ05378.1
Methyltransferase, FkbM family.
  
     0.506
SER10933.1
Zinc carboxypeptidase.
  
     0.488
SER09427.1
Hypothetical protein.
       0.483
SER75549.1
Proprotein convertase P-domain-containing protein.
  
     0.476
SES40999.1
Regulatory protein, luxR family.
  
     0.475
SEQ46063.1
Helix-turn-helix domain-containing protein.
 
   
 0.472
Your Current Organism:
Lentzea albida
NCBI taxonomy Id: 65499
Other names: Asiosporangium albidum, DSM 44437, IFO 16102, JCM 10670, L. albida, Lentzea albida Labeda et al. 2001, NBRC 16102, NRRL B-24073, Saccharothrix aerocolonigenes subsp. staurosporea, Streptomyces stauroporeus, Streptomyces staurosporeus
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