STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER23342.1DNA-binding transcriptional regulator, FadR family. (247 aa)    
Predicted Functional Partners:
SEP78947.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.776
SEQ21835.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.776
SES01020.1
GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex.
  
     0.775
SEQ18077.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.774
SES21622.1
Transcriptional regulator, GntR family.
  
  
 0.773
SER16236.1
Transcriptional regulator, GntR family.
  
     0.765
SER58778.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.763
SEQ60369.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.761
SES44502.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.761
SER86517.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.756
Your Current Organism:
Lentzea albida
NCBI taxonomy Id: 65499
Other names: Asiosporangium albidum, DSM 44437, IFO 16102, JCM 10670, L. albida, Lentzea albida Labeda et al. 2001, NBRC 16102, NRRL B-24073, Saccharothrix aerocolonigenes subsp. staurosporea, Streptomyces stauroporeus, Streptomyces staurosporeus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.