STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER39821.1NACHT domain-containing protein. (675 aa)    
Predicted Functional Partners:
SES39972.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.754
SES05979.1
Hypothetical protein.
  
     0.745
SER85472.1
Tfp pilus assembly protein FimV.
  
     0.742
SER98303.1
NYN domain-containing protein.
  
     0.733
SER22785.1
Glycosyltransferase sugar-binding region containing DXD motif-containing protein.
  
     0.714
SER09252.1
DNA-binding transcriptional activator of the SARP family.
  
     0.706
SER80914.1
Flp pilus assembly protein TadD, contains TPR repeats.
  
     0.687
SEP93584.1
DivIVA domain-containing protein.
  
     0.676
SEQ48613.1
Helix-turn-helix domain-containing protein.
  
     0.653
SES35743.1
V/A-type H+-transporting ATPase subunit G/H.
  
     0.645
Your Current Organism:
Lentzea albida
NCBI taxonomy Id: 65499
Other names: Asiosporangium albidum, DSM 44437, IFO 16102, JCM 10670, L. albida, Lentzea albida Labeda et al. 2001, NBRC 16102, NRRL B-24073, Saccharothrix aerocolonigenes subsp. staurosporea, Streptomyces stauroporeus, Streptomyces staurosporeus
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