STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER47011.1Hypothetical protein. (338 aa)    
Predicted Functional Partners:
SER47034.1
SnoaL-like polyketide cyclase.
    
  0.782
SEP89804.1
Metallo-beta-lactamase superfamily protein.
  
  
  0.753
SEQ02536.1
Adenylyltransferase and sulfurtransferase.
  
 0.741
SER46985.1
Transcriptional regulator, TetR family.
 
     0.663
SES41074.1
Amino acid adenylation domain-containing protein.
   
 0.596
SES19521.1
Site-specific DNA recombinase.
  
    0.589
SER45810.1
Subtilase family protein.
  
     0.582
SEP74452.1
Hypothetical protein.
  
     0.573
SES43912.1
Hypothetical protein.
  
     0.570
SES27256.1
Subtilase family protein.
  
     0.560
Your Current Organism:
Lentzea albida
NCBI taxonomy Id: 65499
Other names: Asiosporangium albidum, DSM 44437, IFO 16102, JCM 10670, L. albida, Lentzea albida Labeda et al. 2001, NBRC 16102, NRRL B-24073, Saccharothrix aerocolonigenes subsp. staurosporea, Streptomyces stauroporeus, Streptomyces staurosporeus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.