STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER55521.1MFS transporter, SET family, sugar efflux transporter. (394 aa)    
Predicted Functional Partners:
SER55487.1
Gamma-glutamyltranspeptidase / glutathione hydrolase.
       0.581
SER56047.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.468
SEQ46667.1
Patatin-related protein.
  
     0.464
SES35743.1
V/A-type H+-transporting ATPase subunit G/H.
  
     0.460
SEQ25870.1
Conserved repeat domain-containing protein.
  
     0.459
SEQ47844.1
Hypothetical protein.
  
     0.459
SER74945.1
Hypothetical protein.
  
     0.450
SER15927.1
Patatin-like phospholipase.
  
     0.423
SER85472.1
Tfp pilus assembly protein FimV.
  
     0.421
SEQ75078.1
Membrane protein.
  
     0.410
Your Current Organism:
Lentzea albida
NCBI taxonomy Id: 65499
Other names: Asiosporangium albidum, DSM 44437, IFO 16102, JCM 10670, L. albida, Lentzea albida Labeda et al. 2001, NBRC 16102, NRRL B-24073, Saccharothrix aerocolonigenes subsp. staurosporea, Streptomyces stauroporeus, Streptomyces staurosporeus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.