STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER73939.1PPOX class probable F420-dependent enzyme. (154 aa)    
Predicted Functional Partners:
SER73916.1
Hypothetical protein.
       0.741
SES13612.1
Uncharacterized conserved protein YjbJ, UPF0337 family; Belongs to the UPF0337 (CsbD) family.
 
    0.602
SES14603.1
Probable F420-dependent oxidoreductase, Rv1855c family.
  
     0.575
SER73959.1
Pimeloyl-ACP methyl ester carboxylesterase.
       0.570
SER63083.1
Deazaflavin-dependent oxidoreductase, nitroreductase family.
  
     0.551
SER82099.1
Probable F420-dependent oxidoreductase, Rv3520c family.
  
     0.524
SEQ99129.1
Hypothetical protein.
   
    0.510
SER00588.1
CsbD-like; Belongs to the UPF0337 (CsbD) family.
  
    0.496
SER27014.1
CsbD-like; Belongs to the UPF0337 (CsbD) family.
  
    0.496
SES43422.1
CsbD-like; Belongs to the UPF0337 (CsbD) family.
  
    0.496
Your Current Organism:
Lentzea albida
NCBI taxonomy Id: 65499
Other names: Asiosporangium albidum, DSM 44437, IFO 16102, JCM 10670, L. albida, Lentzea albida Labeda et al. 2001, NBRC 16102, NRRL B-24073, Saccharothrix aerocolonigenes subsp. staurosporea, Streptomyces stauroporeus, Streptomyces staurosporeus
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