STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER70488.1Coenzyme F420-reducing hydrogenase, alpha subunit. (431 aa)    
Predicted Functional Partners:
SER70520.1
Coenzyme F420-reducing hydrogenase, gamma subunit.
 
 0.999
SER59102.1
NADH-quinone oxidoreductase subunit F.
   
 0.995
SER70550.1
NAD(P)H-flavin reductase.
 
  
 0.993
SER70596.1
4Fe-4S dicluster domain-containing protein.
 
  
 0.978
SER70465.1
Hydrogenase maturation protease.
 
  
 0.971
SER70569.1
Cyclic nucleotide-binding domain-containing protein.
 
   
 0.959
SEQ82345.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.915
SEQ82800.1
NADH dehydrogenase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
   
 0.906
SEQ02598.1
Assimilatory nitrate reductase catalytic subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
 0.885
SER59066.1
Formate dehydrogenase major subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
 0.885
Your Current Organism:
Lentzea albida
NCBI taxonomy Id: 65499
Other names: Asiosporangium albidum, DSM 44437, IFO 16102, JCM 10670, L. albida, Lentzea albida Labeda et al. 2001, NBRC 16102, NRRL B-24073, Saccharothrix aerocolonigenes subsp. staurosporea, Streptomyces stauroporeus, Streptomyces staurosporeus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.