STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER85454.1Hypothetical protein. (629 aa)    
Predicted Functional Partners:
SER85392.1
PPE family protein.
 
     0.902
SER85472.1
Tfp pilus assembly protein FimV.
 
     0.888
SER85433.1
YbaB/EbfC DNA-binding family protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.
       0.771
SER37112.1
PPE family protein.
  
   0.766
SER40813.1
Hypothetical protein.
  
 
   0.756
SER33343.1
Hypothetical protein.
  
     0.734
SES41936.1
Phospholipase A2.
  
     0.728
SEQ79166.1
Type VII secretion protein EccB.
  
   0.722
SES42969.1
Hypothetical protein.
  
     0.718
SES25468.1
Hypothetical protein.
  
     0.697
Your Current Organism:
Lentzea albida
NCBI taxonomy Id: 65499
Other names: Asiosporangium albidum, DSM 44437, IFO 16102, JCM 10670, L. albida, Lentzea albida Labeda et al. 2001, NBRC 16102, NRRL B-24073, Saccharothrix aerocolonigenes subsp. staurosporea, Streptomyces stauroporeus, Streptomyces staurosporeus
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.